namespace xlink = “http://www.w3.org/1999/xlink”
namespace dc = “http://purl.org/dc/elements/1.1/”
## XML schema for xmalesia project. $Revision: 1.4 $ $Date: 2008/12/11 12:08:02 $
grammar {
start =
## xmal: the containing element
element xmal {
## Release version of the xmal schema. Currently 0.1
attribute version { text } &
## Revision version of this instance – use RCS or SVN keywords
element revision { text }? &
## Revision date of this instance – use RCS or SVN keywords
element revdate { text }? &
## The main individual records database
element indivs {
## Each individual organism gets a record
element indiv {
## with an integer id code
attribute id { xsd:ID } &
element notes { richtext }? &
element legal {
element sit {
attribute ref {xsd:IDREF }, empty
}+
}? &
## Permanent marking of the individual
element tagged {
## Tag code
element tag { text }? &
## Plot code (could be linked later to a plots element)
element plot { text }?
}? &
## Location information
element locn {
attribute ref { xsd:IDREF } &
element notes { richtext }? &
## Microhabitat information
element microhab { “dry” | “saltwater”| “swampy”| “rocks” | “riverbank” }? &
## Elevation at the plant (m)
element elev { “xsd:float” }?
} &
element pheno {
element obs {
element repro { “flower” | “fruit” | “bud” }+ &
element date { xsd:date } &
element notes { richtext }?
}+
}? &
## Diameter (optional)
element ontogeny {
## Measurement event (one or more)
element meas {
## Date (mand)
element date { xsd:date }? &
element habit { “seedling” | “sapling” | “shrub” | “tree” |
“liana” | “epiphyte ” | “herb” | “hemiepi” } &
## Diameter in cm
element diam {
attribute prec { xsd:float}? &
attribute multiplestem { xsd:boolean }? &
## Information from memory?
attribute mem { xsd:boolean }? &
xsd:float?
}? &
## Height in m
element heightm {
attribute prec { xsd:float}? &
## Information from memory?
attribute mem { xsd:boolean }? &
xsd:float?
}? &
element abund { “common” | “rare” }? &
element dead { empty }? &
element notes { richtext }?
}+
}? &
element ident {
(
(
element taxon {
attribute ref { xsd:IDREF } &
attribute confid { “f-” | “f+” | “g-” |”g+” |”s-” |”s+” } &
element date { xsd:date }? &
element by { text }? &
element email { text }? &
element using {
element memory { empty } |
element doc { attribute ref { xsd:IDREF }, empty } |
element internet { text? | element url {xsd:anyURI}? } |
element match {
## One or more specimens
element specimen {
(
## The herbarium acquistion code
element herbcode { text } |
## The original collectors code
element collcode { text } |
(
element herbcode { text } &
element collcode { text }
)
) &
## The collector
element collby { text }? &
## Collection date
element colldate { xsd:date }? &
## The herbarium housing the specimen
element herb { text } &
## Determined by
element detby { text }? &
## Determation date
element detdate { xsd:date }? &
element notes { richtext }?
}+ &
## Matching notes
element notes { richtext }?
}
}* &
element notes { richtext }?
}* &
element mtdef {
attribute id { xsd:ID } &
element by { text } &
element date { xsd:date }
}?
)
|
element indivmatch {
attribute ref { xsd:IDREF } &
attribute confid { “lo” | “med” | “hi” } &
element by { text } &
element date { xsd:date } &
element notes { richtext }?
}*
|
element mtmatch {
attribute ref { xsd:IDREF } &
attribute confid { “lo” | “med” | “hi” } &
element by { text } &
element date { xsd:date } &
element notes { richtext }?
}*
) &
element local {
element lang { “malay” },
element name { text }
}* &
element notes { richtext }?
}? &
element colls {
element coll {
attribute collno { text } &
element by { text } &
element date { xsd:date }? &
element notes { richtext }? &
(
element repro { “bud” | “flower” | “fruit” | “sterile” }+ |
element sterile { empty }
)? &
## Number of replicates
element reps {
attribute type { “leaf” | “fruit” | “twig” | “dna” | “barkdna” | “flower” } &
xsd:integer
}+
}+
}? &
element images {
element image {
attribute imgno { text } &
attribute of { “flower” | “fruit” | “twig” | “seed”
| “infl” | “bole” | “leaf” }? &
element by { text }? &
element date { xsd:date }? &
element url { xsd:anyURI }?
}+
}? &
element charstates {
element charstate {
attribute char { xsd:IDREF },
attribute state { xsd:IDREF },
empty
}* &
element notes { text }?
}? &
element dna {
element seq {
element name { text }? &
element primers {
element primer {
attribute dir { “fwd” | “rev” } &
element name { text } &
element acgt { dna }
}+
} &
element seqby {text }? &
element contigby { text }? &
element acgt { dna } &
element seqdate { xsd:date }?
}+
}? &
element todo { richtext }? &
element uses {
attribute med { xsd:boolean }? &
attribute food { xsd:boolean }? &
richtext
}?
}+
}? &
element legal {
element situation {
attribute id { xsd:ID } &
element letter {
element domain { “specimens” | “ip” | “research” } &
element datebegin { xsd:date } &
element dateend { xsd:date }? &
element shortdesc { richtext } &
element desc { richtext }
}+
}+
}? &
element taxa {
## taxon info will link out to other resources
element taxon {
attribute id { xsd:ID } &
## A dummy family name for taxa not yet assigned to lower rank
element tmpfam { text }? &
element genus { text }? &
element genauth { text }? &
element species { text }? &
element spauthor { text }? &
element subtype { “var” | “ssp” | “forma” }? &
element sub { text }? &
element subauth { text }? &
element local {
element lang { “malay” | “english” },
element name { text }
}* &
element notes { richtext }? &
element econ { richtext }? &
element med { richtext }? &
element info {
element doc { attribute ref { xsd:IDREF }, empty } |
element url { xsd:anyURI }
}*
}+
}? &
element chars {
element char {
attribute id { xsd:ID } &
element phrase { text } &
element notes { richtext }? &
element depends {
attribute char { xsd:IDREF },
attribute state { xsd:IDREF },
empty
}* &
element state {
attribute id { xsd:ID } &
element phrase { text } &
element notes { richtext }? &
element depends {
attribute char { xsd:IDREF },
attribute state { xsd:IDREF },
empty
}*
}+
}+
}? &
element locns {
element locn {
attribute id { xsd:ID } &
attribute parentlocn { xsd:IDREF }? &
element notes { richtext }? &
element todo { richtext }? &
element inpa { “tngp” }? &
element veg { “secondary forest” | “primary forest” |
“shrubland” | “grassland” }? &
element geomorph { richtext }? &
(
(
## long in d.ddddd. = DwC:DecimalLongitude
element long { xsd:float } &
## lat in d.ddddd = DwC:DecimalLatitude
element lat { xsd:float }
) |
element vectorfrom {
attribute ref { xsd:IDREF } &
element distkm { xsd:float } &
element bearing { xsd:float }
}
)? &
## precision or bounding box, in km
element preckm { xsd:float } &
## elevation
(
(
element minelev { xsd:float } &
element maxelev { xsd:float }
) |
element meanelev { xsd:float }
)? &
## = DwC:Country
element country { “Indonesia” | “Malaysia” }? &
## = Dwc:StateProvince, BioGeoMancer:adm1
element province { text }? &
## = Dwc:County, BioGeoMancer:adm2
element county { text }? &
## = Dwc:Locality
element locality { text }? &
## = Dwc:Island
element island { “Borneo” }?
}+
}? &
element watchlist {
element taxon {
attribute ref { xsd:IDREF } &
element who { text } &
element email { text }
}+
}? &
## Citation list for citations (optional)
element citations {
## Citation text string (one or more)
element citation {
## code as attribute (mand)
attribute id { xsd:ID } &
## Citation as free text string (mand)
element free { text }? &
element bibtex {
## = bibtex type; = dc:type
element type { “book” | “article” | “incollection” } &
## = bibtex:author; = dc:creator
element author { text } &
## = bibtex:editor;
element editor { text }? &
## = bibtex:title; = dc:title
element title { text } &
## = bibtex:booktitle; = dc:title
element booktitle { text }? &
## = bibtex:year; = dc:date
element year { xsd:integer } &
## = bibtex:journal; ~= dc:source
element journal { text }? &
## = bibtex:volume
element volume { xsd:integer }? &
## = bibtex:pages
element pages { text }? &
## = bibtex:publisher; ~= dc:publisher
element publisher { text }? &
## = bibtex:address
element address { text }? &
element doi { xsd:anyURI }?
}?
}+
}?
}
## Richtext: the main text descriptions can contain interleaved:
richtext =
## Plain text
text* &
## Hypertext links to external URLs
element url { attribute ref {xsd:anyURI}, text }* &
## Hypertext links to citation source codes (lowercase, one word)
citex* &
## Paragraph breaks
element pb { empty }*
## Citation link to citation source codes (lowercase, one word)
citex = element cite { attribute ref { xsd:IDREF }, text? }
dna = xsd:token { pattern = “[ACGTN-s]+” }
}