Winkworth, R.C. Darwin and DNA: explaining the New Zealand flora. New Zealand Science Review(in press).
Winkworth, R., Winder, L. & Lockhart P. Molecular Systematics: applying genetic tools to studies of Pacific biodiversity. Melanesian Geo (in press).
2008
Trovó, M., Sano, P.T. & Winkworth, R.C. Morphology and environment: geographic distribution, ecological disjunction, and morphological variation in Actinocephalus polyanthus (Bong.) Sano (Eriocaulaceae). Feddes Repertorium 119: 634-643.
Winkworth, R.C., Bell, C.D. & Donoghue, M.J. Mitochondrial sequences and Dipsacales phylogeny: mixed models, partitioned Bayesian analyses, and model selection. Molecular Phylogenetics & Evolution 46: 830-843.
Dawson, M.I. & Winkworth, R.C. The New Zealand flora: “Moa’s Ark” or “Fly-paper of the Pacific”? New Zealand Garden Journal 11: 19-23
Winkworth, R.C., Lundberg, J. & Donoghue M.J. Resolving campanulid phylogeny: some preliminary insights. Taxon 57: 53-65.
2007
Sanmartín, I., Wanntorp, L. & Winkworth, R.C. West Wind Drift revisited: testing for directional dispersal in the Southern Hemisphere using event-based tree fitting. Journal of Biogeography 34: 398-416.
2006
Winkworth, R.C. A Review of: “Mathematics of Evolution and Phylogeny” Olivier Gascuel (editor). 2005. Oxford University Press, New York, New York. 416 pp. ISBN 0-19-856610-7. £45 (hardcover). Systematic Biololgy 55: 532-533.
2005
Winkworth, R.C., Wagstaff, S.J., Glenny, D. & Lockhart P.J. Evolution of the New Zealand alpine flora: origins, diversification and dispersal. Organisms, Diversity & Evolution 5: 237-247.
Winkworth, R.C., Bryant, D., Lockhart, P.J. & Moulton, V. Biogeographic interpretation of split graphs: least squares optimization of branch lengths. Systematic Biololgy 54: 56-65.
Winkworth, R.C. & Donoghue, M.J. Viburnum phylogeny based on combined molecular data: implications for taxonomy and biogeography. American Journal of Botany 92: 655-668.
2004
Winkworth, R.C. & Donoghue, M.J. Viburnum phylogeny: evidence from the duplicated nuclear gene waxy. Molecular Phylogenetics & Evolution 33: 109-126.
Donoghue, M.J., Baldwin, B., Li, J. & Winkworth, R.C. Viburnum phylogeny based on ITS and chloroplast sequences. Systematic Botany 29: 188-198.
2003
Donoghue, M.J., Bell, C.D. & Winkworth, R.C. The evolution of reproductive characters in Dipsacales. International Journal of Plant Sciences 164 (Suppl.): S453-S464.
2002
Winkworth, R.C., Wagstaff, S.J., Glenny, D. & Lockhart P.J. Plant dispersal N.E.W.S. from New Zealand. Trends Ecol. Evol. 17: 514-520
Winkworth, R.C., Robertson A.W., Grau, J. & Lockhart, P.J. The origins and evolution of the genus Myosotis (Boraginaceae). Molecular Phylogenetics & Evolution 24: 180-193.
2000
Mclenachan, P.A., Stöckler, K., Winkworth, R.C., McBreen, K., Zauner, S. & Lockhart, P.J. Markers derived from amplified fragment length polymorphism gels for plant ecology and evolution studies. Molecular Ecology 9: 1899-1903.
1999
Winkworth, R.C., Robertson, A.W., Ehrendorfer, F. & Lockhart, P.J. The importance of dispersal and recent speciation in the flora of New Zealand. Journal of Biogeography 26: 1323-1327.